PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15216

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 27694.2 Da PI: 8.8409

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15216	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.2e-19	77	130	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k Ro06_G15216 77 KKKRLSSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 130 56679************************************************9 PP
2	HD-ZIP_I/II	119.6	1.7e-38	76	167	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rls++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd++++e+++L++ev +L++ l+ Ro06_G15216 76 EKKKRLSSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDSVSKEKQKLQDEVMKLKTILR 167 69*************************************************************************************97665 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDWNNTNLRP QQHHLVSRPE PSFGFLYNYN FDQFPHPGME MKHHQAMMSE TPQGSVPSSM 60 ERNNHHIMSY GCSSQEKKKR LSSDQLESLE RSFQEEIKLD PDRKMKLSRD LGLQPRQIAV 120 WFQNRRARWK AKQLERLYDA LKQEYDSVSK EKQKLQDEVM KLKTILREEV ARKQVSPVYT 180 EISGEETVES TSVAAIRSSN KRVGVSQNQI AEGNYIFNVE EYNPVSPPYW GALPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	106	KKKRLSSDQLESLERSFQEEIKLDPDRKMK
2	125	133	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-59	HD-ZIP family protein