PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G14747
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 327aa    MW: 37109.1 Da    PI: 6.1335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G14747genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.6e-23143204159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v++ +++p++  +tY g+H+++
  Ro06_G14747 143 VDDGHAWRKYGQKTILNTRHPRNYFRCTHKfdqGCKATKHVQKIKDEPQLYRTTYYGNHTCT 204
                  59***************************9999***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MEWTWPESVS SYRQRVMEEL VQGREMANQL RRVLGGDVGS AEGLVTKILG SFTNTLFILN  60
ENQEAKAELL SPIQANSTTS TVTASGAGVA DSSSWDVVHD DAVKSEDSNE ESCKSTETLK  120
DRRGSYKRSK STRSWTKDTL DLVDDGHAWR KYGQKTILNT RHPRNYFRCT HKFDQGCKAT  180
KHVQKIKDEP QLYRTTYYGN HTCTDYLKAP ELILDCSSPG DSSKNMIRFN NTNNDSTSKF  240
LSSFRSIKKE SDMGKETITP VSDHDHLTHH NQSSPLCDLM SPVLGVFESS GPNSLFTSMM  300
QYDHDDLYYS RMMGEYFDDK VDFPCEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-39WRKY family protein