PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G14435
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 332aa    MW: 37502.8 Da    PI: 7.7945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G14435genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.47e-082872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+eE +++ +a +++ ++   +W ++a+ ++ g+t  +++  + 
      Ro06_G14435 28 EWTAEENKRFENALALYDKDtpdRWLKVASSIP-GKTVGDVIKQYK 72
                     5********************************.****99988775 PP
2Myb_DNA-binding26.41.6e-081702061147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
      Ro06_G14435 170 QFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 206
                      68999*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MYRGMEVLSP ASYLQTSNWL FQESKGAEWT AEENKRFENA LALYDKDTPD RWLKVASSIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YSSNPFTLEW VNDQGFDGLK QYYSVGGKRG  120
SSTRPSDQER KKGVPWTEEE HSLFGLCPSG IVDRSAAFDV VLFDKLYYRQ FLMGLKKYGK  180
GDWRNISRNF VTTRTPTQVA SHAQKYYIRQ LTGGKDKRRS SIHDITTVNL SDTKSGSSQS  240
TSKSPPPQDH DSAAVVQSQQ HPKVSKQQFD WKVSNEGPHM VFNSMNGNAI IGPFFGIPSQ  300
VPKLEEQDFF SGNDLHGSQL GYHNARFQMQ YQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-112MYB family protein