PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13641

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 416aa MW: 47912.2 Da PI: 4.4005

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13641	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.6	4.5e-15	159	243	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ r ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk++ + t +++s+++yf++++ Ro06_G13641 159 WTEHETFVLLDAWGDRFLRRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERVKFAE-TGGATSKWVYFKKMD 243 ***********************************762678*****************999998.689999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MDDTEDDARY PPNVYGANHP QGYDSSQPPK LPARSGSYSR PDSRYADDDD EDEDEEDEEL 60 GEDEDHNGQN GYPSVHKDDD DDEDDDEGDD DEDEDDEDDD KSKIFKRIDD VDLLKHPKKR 120 KLKSLISSYE FAPRVPAPSA PAPPAPRQSH GGRNALTDWT EHETFVLLDA WGDRFLRRGK 180 KSLRSEEWQE VAEKVSEVSK IERTDTQCRN RLDTLKKKYK KERVKFAETG GATSKWVYFK 240 KMDMLMSSPQ QQAGLSCGLD SGEYVFMNPR VYLNRANGLD EMRDSPGNSE SAEGVEDESD 300 GLPPKKRRFG RDNDERSSFR LLADSIQKFS DIYEKIEKSK RQQMVELEKM RMDFHRDLEM 360 QKRQIMERAQ AEIAKMRQAD DEENDVSAEN ASGYIIATVV DPSWFHVDPS WFHVDP

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MDDTEDDARY PPNVYGANHP QGYDSSQPPK LPARSGSYSR PDSRYADDDD EDEDEEDEEL  60
GEDEDHNGQN GYPSVHKDDD DDEDDDEGDD DEDEDDEDDD KSKIFKRIDD VDLLKHPKKR  120
KLKSLISSYE FAPRVPAPSA PAPPAPRQSH GGRNALTDWT EHETFVLLDA WGDRFLRRGK  180
KSLRSEEWQE VAEKVSEVSK IERTDTQCRN RLDTLKKKYK KERVKFAETG GATSKWVYFK  240
KMDMLMSSPQ QQAGLSCGLD SGEYVFMNPR VYLNRANGLD EMRDSPGNSE SAEGVEDESD  300
GLPPKKRRFG RDNDERSSFR LLADSIQKFS DIYEKIEKSK RQQMVELEKM RMDFHRDLEM  360
QKRQIMERAQ AEIAKMRQAD DEENDVSAEN ASGYIIATVV DPSWFHVDPS WFHVDP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	KHPKKRK
2	177	221	RRGKKSLRSEEWQEVAEKVSEVSKIERTDTQCRNRLDTLKKKYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	8e-80	Trihelix family protein