PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G13344
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 334aa    MW: 38301.9 Da    PI: 7.2038
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G13344genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.43.6e-46231571128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  + pGfrFhPtdeelv +yL  kve+kk      ++l++ i+++diyk++PwdLp   + +++e+yfF++r +ky+++ r+nr+t sg+Wkatg dk++
  Ro06_G13344  23 MLPGFRFHPTDEELVGFYLPVKVEKKKistrtsIRLDQLIRQIDIYKYDPWDLPI-STVGDRECYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPI 119
                  579************************766666666568***************3.345899************************************ PP

          NAM  93 lskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                  +s+k+ l  +glkk+Lv+y+g+a kg+ktdW+m+e+rl
  Ro06_G13344 120 YSSKDPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 157
                  **7443355***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MEEAKVKLIK DDDDDEEAGG GGMLPGFRFH PTDEELVGFY LPVKVEKKKI STRTSIRLDQ  60
LIRQIDIYKY DPWDLPISTV GDRECYFFCR RGRKYRNSIR PNRVTGSGFW KATGIDKPIY  120
SSKDPLECIG LKKSLVYYRG SAGKGTKTDW MMNEFRLPPN GKSTTNFLNA KDNTQEAEVW  180
TLCRIFKRIP SYKKYAPNWQ VETTSTKQNP NTTDSSSKTC SLESENCSTH EPYSSLEDSV  240
VQHINERKPV LQQVDHGETS DWFHGGQLSS VADDHHHRQA NLLAASYNSS SFMRNELSFN  300
PNENDFFTDG SWDELRPVVQ LAVPPSTKFM TMYR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-80NAC family protein