PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G13057 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31462.3 Da PI: 9.5096 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.8e-06 | 38 | 61 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Ro06_G13057 38 KSKPCTKFFSTAGCPFGESCHFLH 61 7789******************** PP | |||||||
2 | zf-CCCH | 26.2 | 1.3e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Ro06_G13057 102 KTRLCNKYNSAEGCKFGDKCHFAHGE 127 8***********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 4.9e-12 | 267 | 291 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+t+lC++fa+ GtC +G+rC+FaHg Ro06_G13057 267 YRTKLCDNFAK-GTCTFGERCHFAHG 291 89*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MMDTRKRGRH EAGGFHANGG FKKNKQELDS LSTGVGSKSK PCTKFFSTAG CPFGESCHFL 60 HYVPGGYNAV AQVMNLGPPP QSSRNLAGPP SNSNGSNAPS AKTRLCNKYN SAEGCKFGDK 120 CHFAHGEREL GKPVAQSYGH DDPRAMAPAL GRNWMEPGHA PLAGPASSFG ASSTAKISVD 180 ASLAGAIIGK GGVNSKHICR QTGAKLSIRD HESDPNLRNI ELEGTFEQIQ QASALVRELI 240 QSVLMSGPTK TPGGGGPGVP APPGSNYRTK LCDNFAKGTC TFGERCHFAH GAAELRKSGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-92 | C3H family protein |