PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13045

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 469aa MW: 52670.1 Da PI: 8.5755

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13045	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	2e-30	242	296	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LHe+Fve+v++LGG+++AtPk+il++m+++gLt+ hvkSHLQkYR+ Ro06_G13045 242 KTRIRWNQDLHEKFVECVNRLGGADQATPKAILRMMGLEGLTIFHVKSHLQKYRI 296 68****************************************************7 PP
2	Myb_DNA-binding	49.7	8.5e-16	246	295	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 rW ++++e++v++v++lGg t+k+I r+mg +g+t ++ks++qky+ Ro06_G13045 246 RWNQDLHEKFVECVNRLGGAdqaTPKAILRMMGlEGLTIFHVKSHLQKYR 295 9***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MKGIEIKIWI MGEPLKKIDC QERIHQHNHG LISDSNFELG SHSSHQLLGL EQQPWNMGIW 60 VQQPTMHQGV PQLQNLEPAK SPSSIMSRFE SPTLAFYATE RCMGFPSQYD DSQVGNPNPN 120 PPSQFPSGQS YDESYSEDIR NTLQSIVKSQ TNSSQSHKSS QISNQIPSSN LPSNKLFLHQ 180 QMSQDSTTAS VGRPFSLAFK NNQEQVVSFF SQQAKQSPRT FSTTVSATYG DSPSTSPSLS 240 SKTRIRWNQD LHEKFVECVN RLGGADQATP KAILRMMGLE GLTIFHVKSH LQKYRIAKYL 300 PDSAEGKSEK RASVNVEPQL DVKTFLQTYD VNFSGSGLQI REALQLQLDV QRQLHEQLEI 360 QRNLQLRIEE QGKQLKKMFD QQQKSTNSLL KTPNGDITCH EDGPSNNDIQ VSSPGGSGNT 420 HFPSKIKLTD QLPSSSIGSS ESVSYLKILL PQLMIRDLFR FVYGKINSR

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MKGIEIKIWI MGEPLKKIDC QERIHQHNHG LISDSNFELG SHSSHQLLGL EQQPWNMGIW  60
VQQPTMHQGV PQLQNLEPAK SPSSIMSRFE SPTLAFYATE RCMGFPSQYD DSQVGNPNPN  120
PPSQFPSGQS YDESYSEDIR NTLQSIVKSQ TNSSQSHKSS QISNQIPSSN LPSNKLFLHQ  180
QMSQDSTTAS VGRPFSLAFK NNQEQVVSFF SQQAKQSPRT FSTTVSATYG DSPSTSPSLS  240
SKTRIRWNQD LHEKFVECVN RLGGADQATP KAILRMMGLE GLTIFHVKSH LQKYRIAKYL  300
PDSAEGKSEK RASVNVEPQL DVKTFLQTYD VNFSGSGLQI REALQLQLDV QRQLHEQLEI  360
QRNLQLRIEE QGKQLKKMFD QQQKSTNSLL KTPNGDITCH EDGPSNNDIQ VSSPGGSGNT  420
HFPSKIKLTD QLPSSSIGSS ESVSYLKILL PQLMIRDLFR FVYGKINSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-68	G2-like family protein