PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G12778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | G2-like | ||||||||
Protein Properties | Length: 394aa MW: 44186 Da PI: 6.6835 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.3 | 4.8e-30 | 109 | 162 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F+ ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ+YR+ Ro06_G12778 109 PRLRWTPDLHLAFLLAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 162 8****************************************************7 PP | |||||||
2 | Myb_DNA-binding | 44.9 | 2.7e-14 | 110 | 161 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ ++ av++lGg t+k++ + m+ g++ ++ks++q+y+ Ro06_G12778 110 RLRWTPDLHLAFLLAVERLGGQekaTPKLVLQLMNvRGLSIAHVKSHLQMYR 161 89************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence |
MIVSGVAEEE THIYMADPEM IEISDEADND DENTSDGSKD IQSKSSSPKS SCLFFDLNEE 60 ASSTGDDHNH EDVSNNIAEA MGSRTSTEGK EQSATSSGAV RQYIRSKMPR LRWTPDLHLA 120 FLLAVERLGG QEKATPKLVL QLMNVRGLSI AHVKSHLQMY RSKKLDESGQ VLPQSNTGML 180 FQGRDHTVEA YQKFNPYRHF RPDDRGNFPS PPLKHQHCDD FNANSSRFIS LLSKNSGMQN 240 YGSSIIRSSH MFSAREAMTR VNGPIRPSRF LEEKRWPPRE MIGNHMKVIR SHSLNISWRD 300 TIDVAQPNSE RSPQASSNVK FISNSYQPLS DPHEVQSVNG ETFRVNDSDQ ESMKDIETTL 360 SLSLSSSSAR QQHQSSTPTS RIRLLSFPLS ISGP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-36 | G2-like family protein |