PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G12392
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 763aa    MW: 84983.1 Da    PI: 5.8609
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G12392genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21108163156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Ro06_G12392 108 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 163
                  7999************************************************9877 PP
2START230.25.9e-722775002206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ +l++lv++++d++ qW+e+++    ka+t++vi
  Ro06_G12392 277 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNVEIPasgrpkRSIEASRETGVVFVDLPKLVQSFMDVN-QWKEMFPsmisKAATVDVI 373
                  56789***********************************7666699*******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w++vdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh ++++++
  Ro06_G12392 374 SNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCSKQLSAEQWAVVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKST 470
                  *********************************************************98.9************************************* PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  ++ ++rs+v+sgla+ga++wvatlq qce+
  Ro06_G12392 471 VQTMYRSIVNSGLAFGARHWVATLQLQCER 500
                  ****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGTPAET TANREVEEGD EGSVGGRRRS  60
REDTAEISSE NSGPVRSRSA EDIDFDAEMG EQDEDDGDGD NKNKKKKRKK YHRHTTEQIR  120
EMEALFKESP HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKGEMEK  180
LRDENKAMRE QINKACCPNC GSATTSRDAT LTTEEQQLRI ENARLKSEVE KLRAALVKYP  240
PGTSSPSCST GQDQENRSSL DFYTGIFGLE KSRIMEIVNQ AMEELKKMAT AGEPLWVRSV  300
ETGREILNYD EYIKEFNVEI PASGRPKRSI EASRETGVVF VDLPKLVQSF MDVNQWKEMF  360
PSMISKAATV DVISNGEGDN RNGAVQLMFA ELQMLTPLVP TREVYFVRCS KQLSAEQWAV  420
VDVSIDKVED NIDASLVKCR KRPSGCIIED KSNGHCKVIW VEHLECQKST VQTMYRSIVN  480
SGLAFGARHW VATLQLQCER LVFFMATNVP MKDSTGVATL AGRKSILKMA QRMTSSFCRA  540
IGASSYHTWT KISSKTGDDI RIASRKNLND PGEPLGVILC AVSSVWLPVS PYVLFDFLRD  600
ETRRNEWDIM LNGGPAQTIA NLSKGQDRGN AVTIQTMKSK ENSMWILQDS CINAYESMVV  660
YAPVDITGMQ SVMTGCDSSN MAVLSSGFSI LPDGLESRPL VITSRQEERG SDSEGGTLLT  720
VAFQVLTNTS PTAKLTMESV ESANTLISCT LRNIKTSLQC EDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKKKRK
2104110KKKKRKK
3106110KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein