PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G11870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 21795.9 Da PI: 7.2589 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 6e-16 | 48 | 99 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr+++ g+Wv+e r p k+ r++lg+f +e+Aa+a++ a+++l+ge Ro06_G11870 48 PVYKGVRQRS--GKWVCEMRQP---DlKKSRVWLGTFTCPEMAARAYDVAALALKGE 99 68****9865..******9998...6677*************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MVFREEPTAP SSSPSLLMNL GQTLTQMQNG VIKKRKAGRK KFTETRHPVY KGVRQRSGKW 60 VCEMRQPDLK KSRVWLGTFT CPEMAARAYD VAALALKGES AELNFPGEAN ASASSSSLPA 120 LTSTVNLDKV EVGSSRKGYV DEEELFNMPE LLDSMAEGLI VTPLAMQKGF NWDDYDFENA 180 VEFSLWRYGL LFLTL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-31 | ERF family protein |