PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11865

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 465aa MW: 50878 Da PI: 9.9408

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11865	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.7e-25	198	241	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep rCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Ro06_G11865 198 DPEPTRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 241 79***************************************998 PP
2	QLQ	50.9	4.8e-18	130	166	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i++ Ro06_G11865 130 SFFSLTQWQELELQALIFRYMLAGAAVPPELLQPIKR 166 67*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
VSAKAIKEPT EASAESFQQT FSSHKPNPKP TQKKIRRDIN KNQPKPFSMD FHLKQWRNQH 60 ESEEQQPYSS AAAKIPKIEP HQTQTQPEPA SGYALPLFVP EPNTKVISSL SAFSESTTPA 120 SATRFPRMGS FFSLTQWQEL ELQALIFRYM LAGAAVPPEL LQPIKRSLLH SPPYYFHHPL 180 QQYPALLQSG YWGRGAMDPE PTRCRRTDGK KWRCSRDVVA GQKYCERHVH RGRNRSRKPV 240 EVTTTTTAAG GGGGTLAATT SSLVTVASSL GSGSSGGTHF ALSGSSPSID LLRLNQRIKG 300 LQPIVPSNIL NFVNMFPNSF HSSYLLPAAS CSSSESKPEN MSFIEPRREV SGGAQSDSHI 360 LRPFFDDWPG QLQEPDNGRS NASLMNSATS LSISLKLSTG NGVEPGQERE QPQLNWPMGW 420 GSSQMASMGG PLAEALRSSN SNSSPTSVLH QLPRSSASET SFIST

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

VSAKAIKEPT EASAESFQQT FSSHKPNPKP TQKKIRRDIN KNQPKPFSMD FHLKQWRNQH  60
ESEEQQPYSS AAAKIPKIEP HQTQTQPEPA SGYALPLFVP EPNTKVISSL SAFSESTTPA  120
SATRFPRMGS FFSLTQWQEL ELQALIFRYM LAGAAVPPEL LQPIKRSLLH SPPYYFHHPL  180
QQYPALLQSG YWGRGAMDPE PTRCRRTDGK KWRCSRDVVA GQKYCERHVH RGRNRSRKPV  240
EVTTTTTAAG GGGGTLAATT SSLVTVASSL GSGSSGGTHF ALSGSSPSID LLRLNQRIKG  300
LQPIVPSNIL NFVNMFPNSF HSSYLLPAAS CSSSESKPEN MSFIEPRREV SGGAQSDSHI  360
LRPFFDDWPG QLQEPDNGRS NASLMNSATS LSISLKLSTG NGVEPGQERE QPQLNWPMGW  420
GSSQMASMGG PLAEALRSSN SNSSPTSVLH QLPRSSASET SFIST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	4e-70	GRF family protein