PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11568

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 593aa MW: 66864.3 Da PI: 5.3

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11568	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.5e-06	90	113	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC f+ + G+C G +CkF+H+ Ro06_G11568 90 KSILCEFYKA-GQCAKGFKCKFSHD 113 66797777.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MPPKQQAKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVHS LKQSVQPKPD PSKTAAKKKK 60 EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG 120 EKIDLYSDKR QNETMEEWDQ ETLEKVVESK RKEYNMNKPT DIVCKYFLEA VEKKQYGWFW 180 VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKMPIEE EIENQRAKVK TSTPMTPELF 240 MQWKKKKIAE RDAGLASLMA ERAKNDRMSG RELFLSDSSV FVDDAEASEK YQRVQQSEVA 300 EKKVNNNGNG GGSSSSATAD GDAKPTNVDD DVDDDDLDIN ELNELEESLS KLSPKTWKKV 360 RIDESRGKRH QCPSEASVAT FLWRLSRLPT FEVIPTTNWT SRDTILALIW PLFGGNLTLF 420 ALEDLALPVD RAIVLDFCRY VLKSQMKALL EEEAEKIPIE EEIENQRSKV KTSTPMTPEL 480 FMQWKKKKIA ERDAGLASQM AERAKNDHSS GFVDDAEASE KYQREQQSEV AEKKVTNNGN 540 GGGSSSSATA DGDAKPTNVD DDVDDDDLDI NELNELEASL SKVTIQEPGT SAN

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MPPKQQAKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVHS LKQSVQPKPD PSKTAAKKKK  60
EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDLYSDKR QNETMEEWDQ ETLEKVVESK RKEYNMNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKMPIEE EIENQRAKVK TSTPMTPELF  240
MQWKKKKIAE RDAGLASLMA ERAKNDRMSG RELFLSDSSV FVDDAEASEK YQRVQQSEVA  300
EKKVNNNGNG GGSSSSATAD GDAKPTNVDD DVDDDDLDIN ELNELEESLS KLSPKTWKKV  360
RIDESRGKRH QCPSEASVAT FLWRLSRLPT FEVIPTTNWT SRDTILALIW PLFGGNLTLF  420
ALEDLALPVD RAIVLDFCRY VLKSQMKALL EEEAEKIPIE EEIENQRSKV KTSTPMTPEL  480
FMQWKKKKIA ERDAGLASQM AERAKNDHSS GFVDDAEASE KYQREQQSEV AEKKVTNNGN  540
GGGSSSSATA DGDAKPTNVD DDVDDDDLDI NELNELEASL SKVTIQEPGT SAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-148	C3H family protein