PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11568
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 593aa    MW: 66864.3 Da    PI: 5.3
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11568genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.5e-0690113226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC f+ + G+C  G +CkF+H+
  Ro06_G11568  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                  6679**7777.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    
MPPKQQAKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVHS LKQSVQPKPD PSKTAAKKKK  60
EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDLYSDKR QNETMEEWDQ ETLEKVVESK RKEYNMNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKMPIEE EIENQRAKVK TSTPMTPELF  240
MQWKKKKIAE RDAGLASLMA ERAKNDRMSG RELFLSDSSV FVDDAEASEK YQRVQQSEVA  300
EKKVNNNGNG GGSSSSATAD GDAKPTNVDD DVDDDDLDIN ELNELEESLS KLSPKTWKKV  360
RIDESRGKRH QCPSEASVAT FLWRLSRLPT FEVIPTTNWT SRDTILALIW PLFGGNLTLF  420
ALEDLALPVD RAIVLDFCRY VLKSQMKALL EEEAEKIPIE EEIENQRSKV KTSTPMTPEL  480
FMQWKKKKIA ERDAGLASQM AERAKNDHSS GFVDDAEASE KYQREQQSEV AEKKVTNNGN  540
GGGSSSSATA DGDAKPTNVD DDVDDDDLDI NELNELEASL SKVTIQEPGT SAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-148C3H family protein