PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11331

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 435aa MW: 48440.9 Da PI: 5.0395

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.5	3.6e-34	237	291	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWt+eLHe+Fveav+qLGGse+AtPk il++mkv+gLt++hvkSHLQkYR+ Ro06_G11331 237 KPRMRWTQELHEAFVEAVNQLGGSERATPKGILNVMKVEGLTIYHVKSHLQKYRT 291 79****************************************************8 PP
2	Myb_DNA-binding	55.7	1.1e-17	239	290	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av+qlGg t+k I + m +g+t +++ks++qky+ Ro06_G11331 239 RMRWTQELHEAFVEAVNQLGGSeraTPKGILNVMKvEGLTIYHVKSHLQKYR 290 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MSNLGASKAM SSSFPNLPNP LDVNYSKLPD SFQVSAQREK TMHSMLPQPS SLGNLSSSSS 60 RLPCDSHISS VFPRERHSQN SPIALKLPSS GKSLSLTHSE LQSAAGINYP EENKDMSWCP 120 DSIQEFLHFP ENVPDQNGLV DTSTGAIISE DHAEKTDWSD LYPLISFDDA LDPYWELSIG 180 DVAAVDPKPE VLNPCSDILV QQPKIQQQQP QIQQHQPVQS GEFLTGPDPS STASSTKPRM 240 RWTQELHEAF VEAVNQLGGS ERATPKGILN VMKVEGLTIY HVKSHLQKYR TARYKPESSE 300 GICEKNLTPV EEMNSIDLKT SSMGITEALR LQVELQKRLH EQLENQRKLQ LQIEEQGKYL 360 EKMFEQQRKM EDNRVKPTSS TLDEHGKIGT STPMDEGSQD ASTKQKVQES ESYENHDLTG 420 DVDSGALPTK RARTG

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MSNLGASKAM SSSFPNLPNP LDVNYSKLPD SFQVSAQREK TMHSMLPQPS SLGNLSSSSS  60
RLPCDSHISS VFPRERHSQN SPIALKLPSS GKSLSLTHSE LQSAAGINYP EENKDMSWCP  120
DSIQEFLHFP ENVPDQNGLV DTSTGAIISE DHAEKTDWSD LYPLISFDDA LDPYWELSIG  180
DVAAVDPKPE VLNPCSDILV QQPKIQQQQP QIQQHQPVQS GEFLTGPDPS STASSTKPRM  240
RWTQELHEAF VEAVNQLGGS ERATPKGILN VMKVEGLTIY HVKSHLQKYR TARYKPESSE  300
GICEKNLTPV EEMNSIDLKT SSMGITEALR LQVELQKRLH EQLENQRKLQ LQIEEQGKYL  360
EKMFEQQRKM EDNRVKPTSS TLDEHGKIGT STPMDEGSQD ASTKQKVQES ESYENHDLTG  420
DVDSGALPTK RARTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	8e-81	G2-like family protein