PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G11301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 28404.5 Da PI: 4.6118 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 105 | 154 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+tae+Aa a+++a+ +++g Ro06_G11301 105 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEDAALAYDQAAFAMRG 154 9*******.**********44465..*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MDSSFFQNHN SEFSFDSCSS FNSLDSDLSW DMFAFDQNYN QLQLPAQLPF NENDSEEMLL 60 HGVLAQAGGG DSSDATSTPH HSKDHEEVNS ATEEESEPMK EEIAYRGVRR RPWGKYAAEI 120 RDSTRNGVRV WLGTFDTAED AALAYDQAAF AMRGTLAVLN FPADVVYKSL VDMKYGFEEG 180 SSPVLALKRR HSMKKKSSVN KKKKVVQKCD DDVEELRLEN MVVFEDLGAD YLEELLRWWM 240 DEGNKIRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 204 | KRRHSMKKKSSVNKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 9e-51 | ERF family protein |