PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11109
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 445aa    MW: 49461.7 Da    PI: 4.5032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11109genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19115164255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Ro06_G11109 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 164
                  69*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MCGGAIISDF IPAARSQRVT ADLLWPDLKK SSSGKRFYAG RPLRSEIFGL EDDFEADFQE  60
FKDESDVDDD EDMVDSKPFA FSAGKSSSTR GSKTVKSVEC NSQAEKSAKR KRKNQYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDAEAR RIRGKKAKVN FPDEAPRASA  180
LRVVKANPQK VLPKTNMDTL HCNLNQNFNF VNASDQDYYN TMSFLEEKPQ TNNFGYMDTV  240
PANGDFGLKS STLSDPTALY FSSDQGSNSF DCSDFAWGEQ GSKTPEISSV LSSVMEENEN  300
SLFLEDANPT KKLKANPEDL VPVENNVAPK TLSEELSAFE KYYQTPYLEG SWDTSIDTFL  360
NGDATQDGCN PVDLWSFDDL PSMGSSNSSI PQPCEELCAC LPHVAFECGL SEVYDCHAAD  420
ICGVELWSSD VILSPSSKFE KAQHD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-86ERF family protein