PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09963
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 320aa    MW: 35748.2 Da    PI: 5.8813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09963genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.81.9e-171752112359
                  EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  sYYrCt+++C vkk+vers +dp++v++tYeg+Hnh+
  Ro06_G09963 175 SYYRCTTQKCIVKKRVERSFQDPSIVITTYEGKHNHQ 211
                  9***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MSNNEKRSPY QCDPFDYNSH EIDRSSYPYF NYGINSSIYS IPQTPADPQT QNLHGFESDP  60
SYLMSFTDCL HGSMDYNTLS KAFDISCSSS EVISPPLLDQ EDNSNNKAAA EGVGDRNPST  120
PNSLISSSSN EAGAAHHEHE NDQDSDKISN KKDKHPKVVS EEAPGDHEDM LKKVSYYRCT  180
TQKCIVKKRV ERSFQDPSIV ITTYEGKHNH QCPATLRGSI NAVGMLTPSF LASAASGGFD  240
NGSPRFPHEL LLTQLLSTPV NNNQLQLQAH HHHDPASSML YSNLMSTFHE NQQQRQQLYV  300
PHDYGLLQDL TPAFSHKQEP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.18e-26WRKY family protein