PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09924
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 327aa    MW: 37475.7 Da    PI: 9.2055
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09924genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.1e-313483150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Ro06_G09924 34 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 83
                 79***********************************************8 PP
2K-box77.73e-26185274493
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                  s++ s++ea+ + +qqe++kL+++i+++q+++Rh+lGe L++L++k+L++Le +Lek++++iRskK+  l ++ + l+ k  e+++++++
  Ro06_G09924 185 SNTGSVAEANVQFYQQEASKLRRQIREIQNSNRHILGEALSTLNVKDLKNLEGRLEKGISRIRSKKEIELQNHNNFLRAKIAETDRAQQQ 274
                  334449**************************************************************************9999888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MVESTMEFPK QITPADEPER SSQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL  60
SVLCDAEVAL IVFSTRGRLY EYANNRVIKL VALKKDSHIM SLFSSFCLLC FMSLEFLFDW  120
GCRSDGYYTL CNESLTRGES VEIGSGEPII CWDLLPAWQR QPITGSTKLS VRATIERYKK  180
ACDSSNTGSV AEANVQFYQQ EASKLRRQIR EIQNSNRHIL GEALSTLNVK DLKNLEGRLE  240
KGISRIRSKK EIELQNHNNF LRAKIAETDR AQQQQTNMMP GTSSSAYDQS MPPSQSYDRS  300
FLPVILESNH HYNRQDQNQT PLQLLKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.13e-53MIKC_MADS family protein