PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09878

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 596aa MW: 66433.8 Da PI: 7.3435

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09878	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.6	1.1e-09	383	420	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Ro06_G09878 383 FEHflHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVR 420 554459******************************88 PP
2	BELL	107	1.2e-34	247	315	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF++Lk+ai++q+ Ro06_G09878 247 ESRRKKSRLISMLDEVYRRYKQYYHQMQAVVTSFEYVAGLGNAAPYANLAIKAMTRHFKSLKNAITDQL 315 7899**************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MAESFEPYHV PQQSRRDKLR FLPGQTHPVC VEPGPHLLHG CAASFYDPTS TSLISSSSEL 60 VKEEGHVNLM GFINSSATSL SLHNFRHPYM DPQPSNFAPN PNSVHDINNL FLYPNQHHHH 120 HLRDFHDDVL FKPEPLSLSL SSQPVQVNNL QQRYGYSGIN DGGHGSRSPG PSPLGPFTGY 180 ASILKGSRFL KPAQQLLEEF CDVGSSSRDI YTAVSRIMTD DSSSFLEDPS IESFDDPVSV 240 ASGDGGESRR KKSRLISMLD EVYRRYKQYY HQMQAVVTSF EYVAGLGNAA PYANLAIKAM 300 TRHFKSLKNA ITDQLQSRSS RDTTTYLSRD KDEAIPMLRS STRGIYSQHR SFHNTEVGEH 360 QPVWRPQRGL PERAVTVLRS WLFEHFLHPY PTDTDKIMLA KQTGLSRSQV SNWFINARVR 420 LWKPMVEEIH MLETRQAHIA SQRSGDQNAD RSNDRDHLPS ATSVASENPS TSTRRAQDTV 480 SKRARNEYPD VTVASTHEQL NLSYNNLPSH IHHVGHVGAS MAGGSTSGVS LTLGLHHQNN 540 GIGLSEPPYA IINTAQRFGL GLDGNSDGYA MGGFDAQNRH FGRDVMGGQL LHDFVG

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MAESFEPYHV PQQSRRDKLR FLPGQTHPVC VEPGPHLLHG CAASFYDPTS TSLISSSSEL  60
VKEEGHVNLM GFINSSATSL SLHNFRHPYM DPQPSNFAPN PNSVHDINNL FLYPNQHHHH  120
HLRDFHDDVL FKPEPLSLSL SSQPVQVNNL QQRYGYSGIN DGGHGSRSPG PSPLGPFTGY  180
ASILKGSRFL KPAQQLLEEF CDVGSSSRDI YTAVSRIMTD DSSSFLEDPS IESFDDPVSV  240
ASGDGGESRR KKSRLISMLD EVYRRYKQYY HQMQAVVTSF EYVAGLGNAA PYANLAIKAM  300
TRHFKSLKNA ITDQLQSRSS RDTTTYLSRD KDEAIPMLRS STRGIYSQHR SFHNTEVGEH  360
QPVWRPQRGL PERAVTVLRS WLFEHFLHPY PTDTDKIMLA KQTGLSRSQV SNWFINARVR  420
LWKPMVEEIH MLETRQAHIA SQRSGDQNAD RSNDRDHLPS ATSVASENPS TSTRRAQDTV  480
SKRARNEYPD VTVASTHEQL NLSYNNLPSH IHHVGHVGAS MAGGSTSGVS LTLGLHHQNN  540
GIGLSEPPYA IINTAQRFGL GLDGNSDGYA MGGFDAQNRH FGRDVMGGQL LHDFVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	1e-100	TALE family protein