PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G09266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 27335.5 Da PI: 8.1475 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.5 | 1.6e-45 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l +k Ro06_G09266 9 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAK 106 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e Ro06_G09266 107 SE 108 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MASSSSNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPH 60 QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQM DLTCAKSELS KYQNLQGIAS 120 HGLIAAAAAA AAATATNHHS NNILNNQYNF LSSSRERERE INLISSATTG IGIGTGGVGG 180 GRGSADQYNS ISHHQFFPRD QQQQMIRTFD QAASGNINYD ASSLLAMNVS AGIPFQQPRA 240 AAGDDRRTID PS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 5e-76 | LBD family protein |