PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09250

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 700aa MW: 76830.6 Da PI: 6.6703

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09250	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.2	1.3e-10	272	328	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Ro06_G09250 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 328 57*****************4444.2455535555.7799999***********98 PP
2	AP2	46.7	8e-15	371	422	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ro06_G09250 371 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MNMNWLGFSL SPQEDDAPIS HQLADQETLA SRLGFNSNDQ IQGAGGEADW NMKGVDMNSS 60 DGNNYKRTSS SSDLSPMLMG SSTTTSTSCS IISQPNLENH HQQQQLPKLE NFLGRHSFAD 120 HDQSSTSHDY MFDMNNGPGA ISSNVMNTSN TNSNNIGLSM IKTWLRNQPP QPRDNNHQLE 180 QESKTTKESR NQPQSSLSLS MSTGSLHTVT TATAGGASAS AGAGETTSSS NNNRKQSPVL 240 TATTTDPQTQ TTGGAIEAVP RKAIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ 300 TRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPISTY EKEIDEMKPM TRQEYVASLR 360 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 420 RGLNAVTNFD MSRYDVKSIL ESSALPITTG ASAKRLKDVQ QQPPPPADHH HQIMLSSVLD 480 HHGQMIRSSS STEHDIMGNI FHQDDDHLRQ QLQMGGTHNF FHDHDHQQRS GLMGLMDSSA 540 AAASMEHSSG SNSVIYSVGD HHGNNNGYGS NARGTGSGYI MPMAMSTVVA NHGQNQADGN 600 NINGFGDGDG DDQEVNIKAQ QLGYDHHQNV FLGSSNTTDP AYQHHASNRN LYYQLPVHDD 660 QHESSSEAVA TSSTTCNMNW VPTAVPTHLA HSTFTVWNDT

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MNMNWLGFSL SPQEDDAPIS HQLADQETLA SRLGFNSNDQ IQGAGGEADW NMKGVDMNSS  60
DGNNYKRTSS SSDLSPMLMG SSTTTSTSCS IISQPNLENH HQQQQLPKLE NFLGRHSFAD  120
HDQSSTSHDY MFDMNNGPGA ISSNVMNTSN TNSNNIGLSM IKTWLRNQPP QPRDNNHQLE  180
QESKTTKESR NQPQSSLSLS MSTGSLHTVT TATAGGASAS AGAGETTSSS NNNRKQSPVL  240
TATTTDPQTQ TTGGAIEAVP RKAIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  300
TRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPISTY EKEIDEMKPM TRQEYVASLR  360
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  420
RGLNAVTNFD MSRYDVKSIL ESSALPITTG ASAKRLKDVQ QQPPPPADHH HQIMLSSVLD  480
HHGQMIRSSS STEHDIMGNI FHQDDDHLRQ QLQMGGTHNF FHDHDHQQRS GLMGLMDSSA  540
AAASMEHSSG SNSVIYSVGD HHGNNNGYGS NARGTGSGYI MPMAMSTVVA NHGQNQADGN  600
NINGFGDGDG DDQEVNIKAQ QLGYDHHQNV FLGSSNTTDP AYQHHASNRN LYYQLPVHDD  660
QHESSSEAVA TSSTTCNMNW VPTAVPTHLA HSTFTVWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-120	AP2 family protein