PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09223

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 697aa MW: 76829.1 Da PI: 5.9813

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09223	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.2e-31	216	273	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-.-SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege.Hnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk+vers d++++ei+Y+g Hnh Ro06_G09223 216 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKQVERSF-DGQITEIIYKGApHNHA 273 7**************************************.********9669996 PP
2	WRKY	105	4.1e-33	434	492	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k+v++tYeg+Hnhe Ro06_G09223 434 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKFVITTYEGKHNHE 492 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MGFARTMENK ANSSISIAER RAAKCGFNAD RINTAPAERS PCRLTIPPGI SPTALLDSPM 60 MLPNSQALPS PTTGTFPLLP PNDHTSMLKS ATHEHVPRGS DFGSSFTFKH LPGYSCFENQ 120 GSNVDYQDLV LEQQPMDFEF PMEFPEEANA NNYVVDPSTD VKNDNCVDLQ VPHSSVASDH 180 NSLPKEFIQG EDVEAHHLLE GDNKGYPCVG MARNSEDGYN WRKYGQKQVK GSEYPRSYYK 240 CTHPNCQVKK QVERSFDGQI TEIIYKGAPH NHAQPQPNRR AAASLGSAFS FDEMSEMGEG 300 TRNSLKVDRE SVWSNIQSGE DIKSGYDGRA DGLERTSSTS VVTELSDPLS TTQGKSLGIF 360 ESADTPEFSS TLASVDEDDR ATQRSVSLGD DADNNESESK RRKKDGCLIE TSIASRAVRE 420 PRVVVQIESE IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCSVRKH VERASHDLKF 480 VITTYEGKHN HEVPAARNSN HINSSGGNGH PPAANAQPAL ALSRNTNLPK PETQVQDIAP 540 NFDRKPEFHD EYLRPTYLGN FNNDLKFGAS TIYQMKFPPL QNAMPYGPFG LNHNVAHQAG 600 SVVPDFPMSL PLNLPPSGNL GLAGFDFNNG KSVCPVQPYF SGQQLQENDL RFLKPKQEQK 660 EDGLYDACLP IIDQGSASLS PSSASLLYHR IMGGYSS

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MGFARTMENK ANSSISIAER RAAKCGFNAD RINTAPAERS PCRLTIPPGI SPTALLDSPM  60
MLPNSQALPS PTTGTFPLLP PNDHTSMLKS ATHEHVPRGS DFGSSFTFKH LPGYSCFENQ  120
GSNVDYQDLV LEQQPMDFEF PMEFPEEANA NNYVVDPSTD VKNDNCVDLQ VPHSSVASDH  180
NSLPKEFIQG EDVEAHHLLE GDNKGYPCVG MARNSEDGYN WRKYGQKQVK GSEYPRSYYK  240
CTHPNCQVKK QVERSFDGQI TEIIYKGAPH NHAQPQPNRR AAASLGSAFS FDEMSEMGEG  300
TRNSLKVDRE SVWSNIQSGE DIKSGYDGRA DGLERTSSTS VVTELSDPLS TTQGKSLGIF  360
ESADTPEFSS TLASVDEDDR ATQRSVSLGD DADNNESESK RRKKDGCLIE TSIASRAVRE  420
PRVVVQIESE IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCSVRKH VERASHDLKF  480
VITTYEGKHN HEVPAARNSN HINSSGGNGH PPAANAQPAL ALSRNTNLPK PETQVQDIAP  540
NFDRKPEFHD EYLRPTYLGN FNNDLKFGAS TIYQMKFPPL QNAMPYGPFG LNHNVAHQAG  600
SVVPDFPMSL PLNLPPSGNL GLAGFDFNNG KSVCPVQPYF SGQQLQENDL RFLKPKQEQK  660
EDGLYDACLP IIDQGSASLS PSSASLLYHR IMGGYSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-108	WRKY family protein