PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G09163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29632.1 Da PI: 5.2224 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.7e-17 | 16 | 61 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W+ eEd+ll ++++++G g W++I++ g++R++k+c++rw++yl Ro06_G09163 16 PWSMEEDQLLRKCIEKYGEGKWHRIPHLAGLNRCRKSCRLRWLNYL 61 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.9 | 1.2e-13 | 67 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rg++ +eE +l++++ ++lG++ +W+++a++++ gRt++++k++w+ + Ro06_G09163 67 RGSFEQEEVDLIIKLQRLLGNRqvrSWSLVAARLP-GRTGNDVKNYWNCH 115 899********************************.***********977 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MSNTHCRDTT EMGGIPWSME EDQLLRKCIE KYGEGKWHRI PHLAGLNRCR KSCRLRWLNY 60 LRPNIKRGSF EQEEVDLIIK LQRLLGNRQV RSWSLVAARL PGRTGNDVKN YWNCHLSKKL 120 NAQETDDHEE KINHARNNNV QVIRPQPSKY ASSNSKMPKI SSTPEDQTCQ LALEEDSSSS 180 SMAMLCNIDK DQGQISNTPC VEEKHNGNND FMGDLAMVDL DQFEQVIDQY DEEIDNNKWV 240 WDDSILDMDL WSTDSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-54 | MYB family protein |