PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09110

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 317aa MW: 35208.3 Da PI: 6.2442

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09110	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.2e-39	36	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i++lq+ ++ kael+ + Ro06_G09110 36 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDHRDKDEAMRTIIFQSDVRASDPVGGCYRIIQELQRLIDYNKAELDIVL 133 7*********************************************************************************************9887 PP DUF260 99 ee 100 ++ Ro06_G09110 134 HQ 135 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MSMSSGSLVT TTSTPSSSVP TTSSSSSTKG NGNTQACAAC KYQRRKCAPD CILAPYFPHD 60 RQRQFLNAHK LFGVSNITKI IKHLDHRDKD EAMRTIIFQS DVRASDPVGG CYRIIQELQR 120 LIDYNKAELD IVLHQLALCR AHAQQHTMVP QVGDNPCADQ MIGVDPLSLY ANPIAHFHYQ 180 MAGQQQDQGA PYVFVQNTNG NNGHQHLGPE DVNMWAMQDS MSSLHIKHGM NASDCEDIKP 240 FVDIPCDDDH HRNHEINFQP ADPIAQHSDE ALLKIDNGNL KEDQQSESAA QQVHHHQELG 300 DLKGEATLFM TLTNCTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-57	LBD family protein