PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08502

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 524aa MW: 58633.8 Da PI: 8.0254

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08502	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.4	5.4e-11	215	266	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ +++W +++ gk ++++g+f+t+eeAa+a++ a + +g Ro06_G08502 215 STYRGVSKSGDSKKWQVRLGK----GKDmHSIYVGTFDTKEEAARAYDIATIRVRG 266 569***********88555....2347*****************99887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MLYVQMSMNS DSFRFHSSES MDCNINLQSD NPFQPPNSIE DAPNYYNFTT AHYPFPSPLP 60 FGGYEGFLTG ANNSTSGGSQ AASHNVLNKE TSASSGSGTK SAAIKHNKRS QRQCKSFGNR 120 SSMYRGVTKY ENGRCEAFVW DNTDPEEKAK TSGFEEEEHA ARAHDLAALK LWGESAQLNF 180 PLSHYENEME DMKAFSKKDY FLHIRRKTSF AKGISTYRGV SKSGDSKKWQ VRLGKGKDMH 240 SIYVGTFDTK EEAARAYDIA TIRVRGRKAI TNFDINNYDV QQILDSSKFP IEKGASKTLR 300 RSSVDDVLRK RRTRNIPLLK LNVDSSGNPS LNPSAPPSSQ PIIPTQTTTI DSNSHSQSPI 360 PFLQLPVPHG YQIPTFQANP SFNPPFKYGG GERIMEPTVQ FQPILPSENP DFPFQQYYSK 420 DSQHHLYQNH SSQLLQDTRN PNSQQTPNFV AGWSNLASNS YISRCTTSQV PDASLETMGT 480 NKRTNGDGSN EMNGNLGYPD YGLGNSEWDP STWLDMFLMS SHVL

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MLYVQMSMNS DSFRFHSSES MDCNINLQSD NPFQPPNSIE DAPNYYNFTT AHYPFPSPLP  60
FGGYEGFLTG ANNSTSGGSQ AASHNVLNKE TSASSGSGTK SAAIKHNKRS QRQCKSFGNR  120
SSMYRGVTKY ENGRCEAFVW DNTDPEEKAK TSGFEEEEHA ARAHDLAALK LWGESAQLNF  180
PLSHYENEME DMKAFSKKDY FLHIRRKTSF AKGISTYRGV SKSGDSKKWQ VRLGKGKDMH  240
SIYVGTFDTK EEAARAYDIA TIRVRGRKAI TNFDINNYDV QQILDSSKFP IEKGASKTLR  300
RSSVDDVLRK RRTRNIPLLK LNVDSSGNPS LNPSAPPSSQ PIIPTQTTTI DSNSHSQSPI  360
PFLQLPVPHG YQIPTFQANP SFNPPFKYGG GERIMEPTVQ FQPILPSENP DFPFQQYYSK  420
DSQHHLYQNH SSQLLQDTRN PNSQQTPNFV AGWSNLASNS YISRCTTSQV PDASLETMGT  480
NKRTNGDGSN EMNGNLGYPD YGLGNSEWDP STWLDMFLMS SHVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	2e-58	AP2 family protein