PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G08501
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 355aa    MW: 40230.3 Da    PI: 6.3226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G08501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-1055101655
          AP2   6 VrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +r++  +++W A++        r   +++lg+f+t eeAa+a++ a+ + +g
  Ro06_G08501  55 IRRNADNKKWQARLGKG-----RdiDSIYLGTFDTQEEAARAYDIAAIRVRG 101
                  7999999******6552.....347**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MDGGFEHEEN AARAHDLAAL KLWGESAALN FPLSEYEKDL EEMKSYSKKD YFLYIRRNAD  60
NKKWQARLGK GRDIDSIYLG TFDTQEEAAR AYDIAAIRVR GRRAITNFDI SKYDVQQILD  120
STKFPIKGAS KKLRRSSVDD VLRKRSNTRN IPFLKLNVDS SGNPSLTSSA APSFQPIIQT  180
KTTTIVSNSH SQYPCPFLQY YINNPSSQIP DPWGYQNPKF QSNPTFNPRL TYGGGEQMEP  240
TVQFQPIQPI EKNEFPFHPN YNRDSQHLHQ NPSSNLRQET QNPNSQTNPN FLAAGNNLAS  300
DSYIREFPSS HGDDINEVSE NLVEKGFGVG NSDLDDPSSW LDMFLTSSHR SDSNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-35AP2 family protein