PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G08497
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family AP2
Protein Properties Length: 384aa    MW: 43900.1 Da    PI: 4.7165
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G08497genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.6e-1061105855
          AP2   8 wdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++  + rW A++       k  k  ++g+f+t+eeAa+a++ a  k++g
  Ro06_G08497  61 RYGENTRWQARLGKG----KDkKGLYVGTFDTEEEAARAYDIAVIKFRG 105
                  5556779****6663....235***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MVHNPMSGFH EEEQAARAHD LAALKYWGDS TPLNFQVSDY MKELEEMHAY TKKDYMLHIR  60
RYGENTRWQA RLGKGKDKKG LYVGTFDTEE EAARAYDIAV IKFRGRRTVT NFDLSHYDVE  120
GILKSPNIPI GKGASKFIRW TPADDILQSR RNTKIVPVLQ QVDSSGNPNL TTIAPPYILE  180
PSQLLETPSN PNPAQQYICP SLNSNQNNDQ IQINQFLQYY NNNPNGQNHF YQNPNFPINP  240
SFNNWFNYGG NEQMEPSFQF QYILSPENHE FQFHQYNSDN FQHHLPQNPS SSGLRDSQNS  300
SSQENPNFLS ELTNLPSGSD IREFPGSQEQ EASLARMGTN EGDYTNEVDG NGNVAEDFRV  360
DKPDLDISSS SWLEMFLMTL NSSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-43AP2 family protein