PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08300

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 385aa MW: 43186.2 Da PI: 4.6715

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08300	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.7e-09	257	290	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L+ +gL+++q+ +WF N+R ++ Ro06_G08300 257 WPYPTEEEKLQLSVATGLDQKQINNWFINQRKRH 290 58*****************************885 PP
2	ELK	31.3	4.5e-11	210	231	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+ L++ F+ Ro06_G08300 210 ELKDMLLHKYSGYLSKLRKDFL 231 9********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEDFYRLNPM NMIASSSENV VQVDNSTRIN SSTNTCGGGF NGGPIILSDD NINMLQFQTD 60 QGMNELIKTQ IANHPRYPDL VAAYIDCQKV GAPPEMKNLL EEIGRLSLPI STCRSEIGAD 120 PELDEFMDSY CGVLHTYKEE LSKPVDEATT FLSNIETQLS NLCKGSFQKN NWDYHSTDEA 180 VGSSEEDFSY GEVEAAEGQD ASGFRSGDKE LKDMLLHKYS GYLSKLRKDF LKTRKKGKLP 240 KDARSALLEW WNTHYRWPYP TEEEKLQLSV ATGLDQKQIN NWFINQRKRH WKPSEDMKFA 300 LMEGVSGSIN GEGGPSLLFD TGFGNDEIML IEISIITSSI NNPWPSSGNK AKYLDLDSNH 360 HLFKGCSSGD DNIQPSSAKL PLFNL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEDFYRLNPM NMIASSSENV VQVDNSTRIN SSTNTCGGGF NGGPIILSDD NINMLQFQTD  60
QGMNELIKTQ IANHPRYPDL VAAYIDCQKV GAPPEMKNLL EEIGRLSLPI STCRSEIGAD  120
PELDEFMDSY CGVLHTYKEE LSKPVDEATT FLSNIETQLS NLCKGSFQKN NWDYHSTDEA  180
VGSSEEDFSY GEVEAAEGQD ASGFRSGDKE LKDMLLHKYS GYLSKLRKDF LKTRKKGKLP  240
KDARSALLEW WNTHYRWPYP TEEEKLQLSV ATGLDQKQIN NWFINQRKRH WKPSEDMKFA  300
LMEGVSGSIN GEGGPSLLFD TGFGNDEIML IEISIITSSI NNPWPSSGNK AKYLDLDSNH  360
HLFKGCSSGD DNIQPSSAKL PLFNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	8e-87	TALE family protein