PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08256

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 433aa MW: 47117.6 Da PI: 5.3428

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08256	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.7	6.9e-15	235	290	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + kr rr+ +NRe+ArrsR+RK+a + eLe+ + +L eN++L k+l +++++ + Ro06_G08256 235 DAKRVRRMLSNRESARRSRRRKQAHLTELETQASQLRVENSSLLKRLTDMNQKYNE 290 579**************************************999888777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MDRVFSSMEE MSDHLWSSSA AAAAPANENE EEDEQSKMNR SASEWAFQRF LQEASVSPSS 60 SSPAPEQNDV EEIKVNAAYP NAPNPTRTNN NSSSSSNTAS FNLQLQPPNV PVDSEEYQAF 120 LKTKLDLACA AVALSRVKGS LVKAQDSASL ADSRQQASDA LQLGSQAPSQ GAGHDLCRSH 180 DKNVNAPLGS PSLPAIQNRS GVPIRQATSG SSRDLSDDEE IEGETAMTEN MDPTDAKRVR 240 RMLSNRESAR RSRRRKQAHL TELETQASQL RVENSSLLKR LTDMNQKYNE AAVDNRVLKA 300 DIETLRAKVK MAEETVKRLT GSNPSFHTMS DVSSISMPPF DGSPSETSTD AAVPVQDDPN 360 HHFFQPASNN SIPIHDLRVN NGLADNTPSV ENVQQNSAAT STEAVGNKMG RTPSLHRVAS 420 LEHLQKRIRG GEQ

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MDRVFSSMEE MSDHLWSSSA AAAAPANENE EEDEQSKMNR SASEWAFQRF LQEASVSPSS  60
SSPAPEQNDV EEIKVNAAYP NAPNPTRTNN NSSSSSNTAS FNLQLQPPNV PVDSEEYQAF  120
LKTKLDLACA AVALSRVKGS LVKAQDSASL ADSRQQASDA LQLGSQAPSQ GAGHDLCRSH  180
DKNVNAPLGS PSLPAIQNRS GVPIRQATSG SSRDLSDDEE IEGETAMTEN MDPTDAKRVR  240
RMLSNRESAR RSRRRKQAHL TELETQASQL RVENSSLLKR LTDMNQKYNE AAVDNRVLKA  300
DIETLRAKVK MAEETVKRLT GSNPSFHTMS DVSSISMPPF DGSPSETSTD AAVPVQDDPN  360
HHFFQPASNN SIPIHDLRVN NGLADNTPSV ENVQQNSAAT STEAVGNKMG RTPSLHRVAS  420
LEHLQKRIRG GEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	257	RRSRRRKQ
2	252	257	SRRRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	6e-74	bZIP family protein