PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08233

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 702aa MW: 80342.4 Da PI: 8.7867

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08233	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.3	2.6e-15	158	216	2	65
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W+++e laL+++r+ me+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ Ro06_G08233 158 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAEVGFKRSAEKCKEKFEEESRYFNNIN 216 ******************998.....9*****************************9887 PP
2	trihelix	93.1	2.8e-29	494	585	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ ++ k+plWe++s+ m e g++r++k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Ro06_G08233 494 RWPRDEVLALINLRCSLFNNGDQQDkekdggvVKAPLWERISQGMLEMGYKRNAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 585 8************988888865335566679****************************************8.9999******95 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MGFVRAERER GKERERARNT THKNASMFDG VPAEQLHQFI AASRTNSLPI PLPNIPLSSF 60 PNLQPFDHHH HHHHHHPNNY NIINPPPPPP PQEVLVQLPP PPPHPHNQLL HPSVVLHRRE 120 NDPEKQENST ALALPSSNLA IERERTTSMP PELPNDPWSN DELLALLRIR STMENWFPEF 180 TWEHVSRKLA EVGFKRSAEK CKEKFEEESR YFNNINFNKN FRFLSELEQL YQPPVDPPQN 240 PAEDQPGKNT QKVVEVVKPR EELGDQDKGQ TALDPEESPS NDQTVSEKEV EVIRTKSNNK 300 KRKRQRRFEM LKGFCEDIVN KLMAQQEEIH SKLLEDMVKR DEEKLAKEEA WKKQEMDRMN 360 KELETMAHEQ AVAGDRQATI IQFLKKFTSS TSTGSSPNPS TSTCHVNGPN ESDQEPITPS 420 IQKSTTTTSF HTQNNPSTPT SLTEAIAPQS PSSSTLSINP KASISSLPPE NPSSDHLKTQ 480 NPSSNDKVQD LGKRWPRDEV LALINLRCSL FNNGDQQDKE KDGGVVKAPL WERISQGMLE 540 MGYKRNAKRC KEKWENINKY FRKTKDVNKK RSLDSRTCPY FHQLSTLYNQ GILVPPSDQQ 600 AAPPEKRSPE KQSSPAEGEK NNMWQWSVRA KALEPIRCRF YVLLSMTKVP LRVEKWVPPS 660 ATFGRYRQTS NAVPRMRTAC DGFVCTHTLS QPLCRSATLH RQ

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MGFVRAERER GKERERARNT THKNASMFDG VPAEQLHQFI AASRTNSLPI PLPNIPLSSF  60
PNLQPFDHHH HHHHHHPNNY NIINPPPPPP PQEVLVQLPP PPPHPHNQLL HPSVVLHRRE  120
NDPEKQENST ALALPSSNLA IERERTTSMP PELPNDPWSN DELLALLRIR STMENWFPEF  180
TWEHVSRKLA EVGFKRSAEK CKEKFEEESR YFNNINFNKN FRFLSELEQL YQPPVDPPQN  240
PAEDQPGKNT QKVVEVVKPR EELGDQDKGQ TALDPEESPS NDQTVSEKEV EVIRTKSNNK  300
KRKRQRRFEM LKGFCEDIVN KLMAQQEEIH SKLLEDMVKR DEEKLAKEEA WKKQEMDRMN  360
KELETMAHEQ AVAGDRQATI IQFLKKFTSS TSTGSSPNPS TSTCHVNGPN ESDQEPITPS  420
IQKSTTTTSF HTQNNPSTPT SLTEAIAPQS PSSSTLSINP KASISSLPPE NPSSDHLKTQ  480
NPSSNDKVQD LGKRWPRDEV LALINLRCSL FNNGDQQDKE KDGGVVKAPL WERISQGMLE  540
MGYKRNAKRC KEKWENINKY FRKTKDVNKK RSLDSRTCPY FHQLSTLYNQ GILVPPSDQQ  600
AAPPEKRSPE KQSSPAEGEK NNMWQWSVRA KALEPIRCRF YVLLSMTKVP LRVEKWVPPS  660
ATFGRYRQTS NAVPRMRTAC DGFVCTHTLS QPLCRSATLH RQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	306	KRKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	7e-91	Trihelix family protein