PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro06_G07564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26424.2 Da PI: 9.5826 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.7 | 1.9e-10 | 11 | 58 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 i+ + +r+ tf kR +g+l K eEL +L d+ + vii+ ++ ++l + Ro06_G07564 11 IKHSNQRKNTFRKRSQGLLQKVEELTILWDVTAFVIIYNPDtNQLTVW 58 788999********************************9852566666 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence |
MPRSGVKLRW IKHSNQRKNT FRKRSQGLLQ KVEELTILWD VTAFVIIYNP DTNQLTVWPD 60 RQIVEQMLER FHRLPDDERT RKMVNQETYL MEKVAKLEEK LKKTHTKTMN LLLSQIYEGN 120 KPFSEFEQKE LTDLDLFLRA QLRKIEELIN FKEGDNVTVP LDLGLSLRVN GSNNFGNGGN 180 ITGDGTEMGF GFTGPQSSRN NVGNYLGLSL MPYNPNIGSG WSTSGVLFII |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06500.1 | 1e-18 | M-type_MADS family protein |