PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06780
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 451aa    MW: 51035.8 Da    PI: 6.22
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06780genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.7e-06832127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 +kt+lC  ++r G C++  +C+FaHg+
  Ro06_G06780  8 FKTKLCVLYQR-GRCSR-QSCSFAHGE 32
                 69*********.*****.*******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    
MIEQRKLFKT KLCVLYQRGR CSRQSCSFAH GEMELRRFSG SFQVVSMAPL KTGKDATLLF  60
IIMLPMLFDN GRQDSGGSDL RDTIDRRYSP KRRYSPASDA RGRHTVRADL FPFSFLAYNS  120
LGGNETTEYS PSRSPEKESK RRKRHHLDDQ SDFSGSLRIP NEPEDEAKEA RSVFQKQLKV  180
VQSELNMVEQ RRSQLEVYLG ERSQEVDSLT SKIQELEAQL YREKEECKRS QVRLNKLGDQ  240
LALDIYGIDA NEEDSSINIV SDGETDFPVT LQNEWLNNTS PSKKRLDVNR DSAKESKQGA  300
HATRGHLSTT RRPQKLSRWN IHPAQSNQVN ENEAMSNGIG SPRLLAKEGK HDSRKPASSS  360
MLSADVLKSS ESGPVVPSTS MAAHAVDTEI DIELDEKIEN VENASRRDEE EPAYESERFP  420
LPLPPPPPFP PKNFSRHEGD DEIVDIVNGV E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-35C3H family protein