PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06767
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 740aa    MW: 81372 Da    PI: 5.8953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06767genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.7e-20102157156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Ro06_G06767 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 157
                  688999***********************************************999 PP
2START43.67.9e-15296373169
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                  ela +a++el+++a+ +ep+W+ s+    + +n+de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++
  Ro06_G06767 296 ELAVAAMEELIRMAQIGEPLWMNSVdgstTVLNEDEYIRTFPRGIGpkpsgFKSEASRESAVVIMNHNNLVEILMDVM 373
                  57899********************999999************999******************************98 PP
3START138.66.6e-4437248493206
                  EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
        START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                  +m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+++  +  s +  ++++pSg+li++++ng+skvtwvehv++++r +h+l+++lv+sg+
  Ro06_G06767 372 VMTAEFQVPSPLVPtRESYFVRYCKQHADGTWAVVDVSLDNQRGYT--SALKSCQRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQLVNSGH 467
                  699*****************************************87..56777799****************************************** PP

                  HHHHHHHHHHTXXXXXX CS
        START 190 aegaktwvatlqrqcek 206
                  a+gak+wvatl+rqce+
  Ro06_G06767 468 AFGAKRWVATLDRQCER 484
                  ***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MGMLVGMDHL QDLVLVRFQN HKKPCLGKIL KELAMDLFQP NMMEAGGHFG NPLDMMATQN  60
TSESELNARL ADDFDSATKS GSENMDGGGS GDDGQDPRPN KKKRYHRHTQ HQIQEMEAFF  120
KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKTQH ERHENTSLRN ENEKLRADNM  180
RYREALSNAS CPNCGGPTAI GEMSFDEHHL RLENARLREE IDRISAIAAK YVGKPVGNYP  240
LISSTVPPHR SPLDLGVGNM GSSPHHSFLN SEMYTPGDII RSIGAPSEVD KPMIIELAVA  300
AMEELIRMAQ IGEPLWMNSV DGSTTVLNED EYIRTFPRGI GPKPSGFKSE ASRESAVVIM  360
NHNNLVEILM DVMTAEFQVP SPLVPTRESY FVRYCKQHAD GTWAVVDVSL DNQRGYTSAL  420
KSCQRRPSGC LIQEMPNGYS KVTWVEHVEV DERGVHNLYK QLVNSGHAFG AKRWVATLDR  480
QCERLASALA TNIPTGDVGV ITTQEGRKSM LKLAERMVIS FCAGVSASTT HTWTTLSGTG  540
ADDVRVMTRK SVDDPGRPPG IVLSAATSFW LPVPPKRVFE FLRDENSRSE WDILSNGGVV  600
QEMAHIANGR DTGNCVSLLR SANSSQSNML ILQESCTDPT ASYVIYAPVD IVAMNVVLNG  660
SDPDYVALLP SGFAILPDGI SGSNSGEAES GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN  720
NLIACTVERI KASLSLDNEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0HD-ZIP family protein