PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G06702

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 347aa MW: 39088.1 Da PI: 6.3486

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G06702	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	6.9e-09	274	306	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+ ++ LA+++gL+ +q+ +WF N+R ++ Ro06_G06702 274 PYPSEPQKLALAASTGLSVKQINNWFINQRKRH 306 8*****************************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MESERWFRVS KVREIEKMEG GSNCNSNYYN HDVMRSGPSL MPPPLMNSFT AAADQTSSSS 60 NQQHYFVSLP FTNISPNQND GQGYEMMSVK AKVMGHPLFP RLLASYVNCQ KVGAPAEVVA 120 RLEHAAAASI SYAAANSEAY EESEPDPELD QFMEAYCEML TKYHEELAKP YHEAMLCLSK 180 IDSHLKALSV SPSFSASTSD LVGRSGSSEE ADVNESCIDP RAEDWDIKAK LLHKYGGCFS 240 SLSQELKKKK KSGKLPKEAR VQLQEWWSRN YTWPYPSEPQ KLALAASTGL SVKQINNWFI 300 NQRKRHWKPS SSEGMQFAMV DPQFYYNYMD HLICNPLPMD CASTPLV

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MESERWFRVS KVREIEKMEG GSNCNSNYYN HDVMRSGPSL MPPPLMNSFT AAADQTSSSS  60
NQQHYFVSLP FTNISPNQND GQGYEMMSVK AKVMGHPLFP RLLASYVNCQ KVGAPAEVVA  120
RLEHAAAASI SYAAANSEAY EESEPDPELD QFMEAYCEML TKYHEELAKP YHEAMLCLSK  180
IDSHLKALSV SPSFSASTSD LVGRSGSSEE ADVNESCIDP RAEDWDIKAK LLHKYGGCFS  240
SLSQELKKKK KSGKLPKEAR VQLQEWWSRN YTWPYPSEPQ KLALAASTGL SVKQINNWFI  300
NQRKRHWKPS SSEGMQFAMV DPQFYYNYMD HLICNPLPMD CASTPLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-77	TALE family protein