PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G06674

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 506aa MW: 55118.7 Da PI: 7.2784

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G06674	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	79	105	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ Ro06_G06674 79 PGEPDCIYYLRTGLCGYGSNCRFNHPK 105 5789*********************96 PP
2	zf-CCCH	27.5	5.3e-09	168	183	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tGtCkyG++CkF+H++ Ro06_G06674 168 TGTCKYGSTCKFHHPR 183 9*************96 PP
3	zf-CCCH	37.9	3e-12	206	228	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ Ro06_G06674 206 SCPYYMRTGSCKFGPACKFHHPQ 228 6********************97 PP
4	zf-CCCH	37.5	3.9e-12	347	372	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ Ro06_G06674 347 DQPECRYFMNNGTCKYGADCKYHHPK 372 689*********************96 PP
5	zf-CCCH	32.7	1.2e-10	389	415	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +G+CkyG++C+F H++ Ro06_G06674 389 PGQPVCSNYIMYGICKYGPTCRFDHPF 415 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
LGVILPRNSE AFLGLIAETE KSEGGGVRNL CATDARHSAG SEECCSQSIR WQQAFWRLTI 60 NENQDGGGVA QSNLYPDRPG EPDCIYYLRT GLCGYGSNCR FNHPKYVSQG SQYSGELPER 120 AGQPDCGVSI GLKNSNSWVN INTTENSQYM QFVLMHLLPI YFLPCLLTGT CKYGSTCKFH 180 HPRDRRGAGP VLFNILGLPM HQEEKSCPYY MRTGSCKFGP ACKFHHPQPP SLGTALPAFG 240 STGSTVVPSS GLPYTGGLSA WSFPRAPYIS GPRLATPQPY MPAVVLSPPQ GIVPAHGWNT 300 YVGNLSPVSS TGILGSNLPY TSRSQGESAS NGQIHLSSNS SLPQRPDQPE CRYFMNNGTC 360 KYGADCKYHH PKERIAESAT NPLGLPSRPG QPVCSNYIMY GICKYGPTCR FDHPFMEHSG 420 NYSFGMPMPM LDSSMLSYPR SWIGPQGFET SPSISSKFPD EVQKPESEKY QNSDTKAAEE 480 SPEQATGSLP PSPSSSETVQ DQSVSH

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

LGVILPRNSE AFLGLIAETE KSEGGGVRNL CATDARHSAG SEECCSQSIR WQQAFWRLTI  60
NENQDGGGVA QSNLYPDRPG EPDCIYYLRT GLCGYGSNCR FNHPKYVSQG SQYSGELPER  120
AGQPDCGVSI GLKNSNSWVN INTTENSQYM QFVLMHLLPI YFLPCLLTGT CKYGSTCKFH  180
HPRDRRGAGP VLFNILGLPM HQEEKSCPYY MRTGSCKFGP ACKFHHPQPP SLGTALPAFG  240
STGSTVVPSS GLPYTGGLSA WSFPRAPYIS GPRLATPQPY MPAVVLSPPQ GIVPAHGWNT  300
YVGNLSPVSS TGILGSNLPY TSRSQGESAS NGQIHLSSNS SLPQRPDQPE CRYFMNNGTC  360
KYGADCKYHH PKERIAESAT NPLGLPSRPG QPVCSNYIMY GICKYGPTCR FDHPFMEHSG  420
NYSFGMPMPM LDSSMLSYPR SWIGPQGFET SPSISSKFPD EVQKPESEKY QNSDTKAAEE  480
SPEQATGSLP PSPSSSETVQ DQSVSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-101	C3H family protein