PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 506aa    MW: 55118.7 Da    PI: 7.2784
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06674genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-1179105127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C +++rtG C yG++C+F+H++
  Ro06_G06674  79 PGEPDCIYYLRTGLCGYGSNCRFNHPK 105
                  5789*********************96 PP

2zf-CCCH27.55.3e-091681831227
                  TS--TTTTT-SS-SSS CS
      zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                  tGtCkyG++CkF+H++
  Ro06_G06674 168 TGTCKYGSTCKFHHPR 183
                  9*************96 PP

3zf-CCCH37.93e-12206228527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtG Ck+G+ CkF+H++
  Ro06_G06674 206 SCPYYMRTGSCKFGPACKFHHPQ 228
                  6********************97 PP

4zf-CCCH37.53.9e-12347372227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+ +GtCkyG+ Ck++H++
  Ro06_G06674 347 DQPECRYFMNNGTCKYGADCKYHHPK 372
                  689*********************96 PP

5zf-CCCH32.71.2e-10389415127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+++  +G+CkyG++C+F H++
  Ro06_G06674 389 PGQPVCSNYIMYGICKYGPTCRFDHPF 415
                  5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
LGVILPRNSE AFLGLIAETE KSEGGGVRNL CATDARHSAG SEECCSQSIR WQQAFWRLTI  60
NENQDGGGVA QSNLYPDRPG EPDCIYYLRT GLCGYGSNCR FNHPKYVSQG SQYSGELPER  120
AGQPDCGVSI GLKNSNSWVN INTTENSQYM QFVLMHLLPI YFLPCLLTGT CKYGSTCKFH  180
HPRDRRGAGP VLFNILGLPM HQEEKSCPYY MRTGSCKFGP ACKFHHPQPP SLGTALPAFG  240
STGSTVVPSS GLPYTGGLSA WSFPRAPYIS GPRLATPQPY MPAVVLSPPQ GIVPAHGWNT  300
YVGNLSPVSS TGILGSNLPY TSRSQGESAS NGQIHLSSNS SLPQRPDQPE CRYFMNNGTC  360
KYGADCKYHH PKERIAESAT NPLGLPSRPG QPVCSNYIMY GICKYGPTCR FDHPFMEHSG  420
NYSFGMPMPM LDSSMLSYPR SWIGPQGFET SPSISSKFPD EVQKPESEKY QNSDTKAAEE  480
SPEQATGSLP PSPSSSETVQ DQSVSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-101C3H family protein