PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06109
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 769aa    MW: 86833.5 Da    PI: 6.5234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06109genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.88.7e-1143787471372
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+++A+av+++d++ a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++yk + +++t+    +++l+a++lf  ++P+ k+s+++ 
  Ro06_G06109 378 LRSLLITVAQAVAADDHRTANELLKKVRLHSSPFGDGTQRLAHCFADGLEARLAGTGSQIYKGFVSKRTP---ATDVLKAYHLFLAACPFKKMSNFVS 472
                  689**************************************************************99999...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I++  ++++r+H+iDf+i +G+QWp+L+q +a R++gpp+lRiTg++ p++g   +  +eetg+rLa +Ae+++vpfe+n+ +ak++e+++leeL
  Ro06_G06109 473 NRTIMDLSKKATRLHVIDFGIHYGFQWPTLIQRIALRDGGPPKLRITGIEFPQPGfrPAAGVEETGRRLAAYAESFHVPFEYNA-IAKKWETITLEEL 569
                  ******************************************************9*9***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E l+Vn+ ++ ++lldesv+++s+r++vL+l+++++P+++++   +  +n++ F++rf eal ++s++fd+le+ +pr++ er+ +E+e++gr
  Ro06_G06109 570 KLDRDEFLVVNCLYRGKNLLDESVAVDSARSRVLNLIRRINPDIFIHGVINGAYNAPFFVTRFREALFHFSSMFDMLETVVPRKDCERMLIEKEIIGR 667
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                  e+ nv+aceg er+er e++++W+ r  +aGF ++p++ + +k+a   ++  + + + ++e+  +l++gWk+r+++++S+
  Ro06_G06109 668 EALNVIACEGWERVERPESYKQWQVRNLRAGFVQLPFDRELVKKAAWKVKSSYHKDFVIDEDGRWLLQGWKGRTIFAISV 747
                  *****************************************************888*********************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    
MDPRLGSFSD SLNGVRLSNQ PLSILSHQNI FPQSQFGSHP FLGNNYRGFN YPKPDVTPND  60
LSSGSSLSHE EDSGEDCDFS DEVLKYINQM LMEEDMEDKT CMLQESLELQ VAEKSFYDVL  120
GKKYPPSPEV NHDFSIPYGE TPDDGFYGNG RNYITTSRNS GGYFSDSTLI QSPGGYMSQF  180
QGLPPYSISQ SSYGSSNRVS SLDGLVDSPS SSRHVPDLST ESRSVWQFNK GVEEASRFLP  240
GETNLVVDLD ANWLLAQASK VGTDEEAVKV EKKDEGEYSP DESRGRKNPY REDDEDMEEN  300
RSSKQAAVST EFTLRSELID KILLCSLGEG REHLESKREE LQNGMSKSVP QNEKSKGSNG  360
GKGRGKKQSG NKKDVVDLRS LLITVAQAVA ADDHRTANEL LKKVRLHSSP FGDGTQRLAH  420
CFADGLEARL AGTGSQIYKG FVSKRTPATD VLKAYHLFLA ACPFKKMSNF VSNRTIMDLS  480
KKATRLHVID FGIHYGFQWP TLIQRIALRD GGPPKLRITG IEFPQPGFRP AAGVEETGRR  540
LAAYAESFHV PFEYNAIAKK WETITLEELK LDRDEFLVVN CLYRGKNLLD ESVAVDSARS  600
RVLNLIRRIN PDIFIHGVIN GAYNAPFFVT RFREALFHFS SMFDMLETVV PRKDCERMLI  660
EKEIIGREAL NVIACEGWER VERPESYKQW QVRNLRAGFV QLPFDRELVK KAAWKVKSSY  720
HKDFVIDEDG RWLLQGWKGR TIFAISVNLS RRTIEEDHIQ NHLQRKTKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein