PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06104
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 290aa    MW: 32427.2 Da    PI: 5.2293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06104genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25115167258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++k+s++pr    Ct ++C++kk+vers+edp++++itYeg H h
  Ro06_G06104 115 DDGYKWRKYGQKSIKNSPNPR----CTNPRCSAKKQVERSSEDPDTLIITYEGLHLH 167
                  8*******************6....******************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MEEAIMGTNL PDGMEEELVM ELLDNESPFF VLPEEVIEYS QMSVSNKAGL NRFVQNVYSG  60
PTIRDIENAL SVTTGITVQP QELSQARLSI LERGLSKVEH KYTLKIKSCD NGMADDGYKW  120
RKYGQKSIKN SPNPRCTNPR CSAKKQVERS SEDPDTLIIT YEGLHLHFAY PFFHLTQAQN  180
QNPPTKKPKK KTSTTQAEDH EQEAQESPRS VSPDPKPDLQ PGTFTDQPQE SVEVERGSQG  240
LLQDVVPFMI RNPSSASSNS SRCSYRSPPT SPSSLSWPTY FDVGVNHSIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-50WRKY family protein