PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G05674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 321aa    MW: 36115.1 Da    PI: 7.2595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G05674genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12181206126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Ro06_G05674 181 YQPDICKDYKETGYCGYGDSCKFMHD 206
                  67789********************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MADSGGNPEP GEVCNFFRKP STKRPFRKRT AEAEEDEESN SRSALLPSQR KAAKPDGKLF  60
FSSGPSKSSA SNDGKVILEF KSSNEIQVEH DSRATATLET ETEFSRDARA VRERVLKQSE  120
EALKGTGKNT GNEKLYKGIH GYTDHKAGFR RELTVASEKA GGSHGPLRAS AHIRASTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKVRKRN LALREAGEDV  240
VDDDDDDDDD SLPFACFICR QPFVDPVVTK CNHYFCEHCA LKHHSKNKKC FVCNKPTLGI  300
FNTAHEIRKR IAAEVRASPI D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein