PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G05674

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 321aa MW: 36115.1 Da PI: 7.2595

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G05674	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	181	206	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Ro06_G05674 181 YQPDICKDYKETGYCGYGDSCKFMHD 206 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MADSGGNPEP GEVCNFFRKP STKRPFRKRT AEAEEDEESN SRSALLPSQR KAAKPDGKLF 60 FSSGPSKSSA SNDGKVILEF KSSNEIQVEH DSRATATLET ETEFSRDARA VRERVLKQSE 120 EALKGTGKNT GNEKLYKGIH GYTDHKAGFR RELTVASEKA GGSHGPLRAS AHIRASTRFD 180 YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKVRKRN LALREAGEDV 240 VDDDDDDDDD SLPFACFICR QPFVDPVVTK CNHYFCEHCA LKHHSKNKKC FVCNKPTLGI 300 FNTAHEIRKR IAAEVRASPI D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-154	C3H family protein