PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G05652

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ERF

Protein Properties

Length: 587aa MW: 67381.2 Da PI: 4.3763

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G05652	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.7e-18	70	127	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+Wv+eIr+ps+n k+ r +lg+f ta eAa a+++a+k ++g Ro06_G05652 70 YRGVRQRI-WGKWVSEIRVPSSNRhvassKKvSRLWLGTFNTAVEAALAYDKAAKTMYG 127 9**998.******9998789987669**********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MTTEASHGDR KLGKRPRVDD TLVKWDKYNE NFDFAKDGLV SRRPRRMAAM GARKGCMRGK 60 GGPENSYYSY RGVRQRIWGK WVSEIRVPSS NRHVASSKKV SRLWLGTFNT AVEAALAYDK 120 AAKTMYGPLA RLNFPESSKT FSDESTESSN NAAEFEDCVR EEPKQEDEVF DANVREPVNE 180 WHWEVRNVKS EIVKNDVEVE ALAMNNVKES VDGWHWEPKY VKCELETEDE LVKNDVEVEA 240 PTMNNIREYE DVWRCEPKYV KCELETEDEL INNDVEVEAV AMNNVRESED VWHWQPKYVK 300 YDLETQDELL QSDAAVERLA MNNVREEQFQ AGSYVGSSNH RHDNHLDNDP QIVKFDSVPN 360 EKPYTDLEFS EILLRYSNDY LNTELVDVKC NPRNECNPFT VDTQIMSNPL EKEFAVILES 420 GDNYLHNEPI NVVASNNLET DFGEYENNVL PPNEVQGDIA ETTKLNGHIG FDDNNACLQH 480 DAQIDVAYSP RSSIKASNDI KTQKELNDEL GYLHTWSSNE TYGIELHNLP NQLQTADGLP 540 GSLNYMEEEC LGVDFNLDIL RQSYYSGEFK EKVLPDSWFP YSQGGSS

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MTTEASHGDR KLGKRPRVDD TLVKWDKYNE NFDFAKDGLV SRRPRRMAAM GARKGCMRGK  60
GGPENSYYSY RGVRQRIWGK WVSEIRVPSS NRHVASSKKV SRLWLGTFNT AVEAALAYDK  120
AAKTMYGPLA RLNFPESSKT FSDESTESSN NAAEFEDCVR EEPKQEDEVF DANVREPVNE  180
WHWEVRNVKS EIVKNDVEVE ALAMNNVKES VDGWHWEPKY VKCELETEDE LVKNDVEVEA  240
PTMNNIREYE DVWRCEPKYV KCELETEDEL INNDVEVEAV AMNNVRESED VWHWQPKYVK  300
YDLETQDELL QSDAAVERLA MNNVREEQFQ AGSYVGSSNH RHDNHLDNDP QIVKFDSVPN  360
EKPYTDLEFS EILLRYSNDY LNTELVDVKC NPRNECNPFT VDTQIMSNPL EKEFAVILES  420
GDNYLHNEPI NVVASNNLET DFGEYENNVL PPNEVQGDIA ETTKLNGHIG FDDNNACLQH  480
DAQIDVAYSP RSSIKASNDI KTQKELNDEL GYLHTWSSNE TYGIELHNLP NQLQTADGLP  540
GSLNYMEEEC LGVDFNLDIL RQSYYSGEFK EKVLPDSWFP YSQGGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	2e-29	ERF family protein