PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G05574

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 306aa MW: 33050.3 Da PI: 8.9605

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G05574	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.7	2.9e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a e+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e Ro06_G05574 4 SCNGCRILRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGTEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +++ Ro06_G05574 102 AVLKGQP 108 9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MRMSCNGCRI LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGTEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT PITSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKAKT RYRFKRSVAK PKAKPKAKPN KTRSGSGVED 180 SAARFEAKPI WTSDEFNRST SHDSSLSHQS EAANVDGDSK ETESMISSET AEASPLFRAE 240 PESSAHKRNA PVQESELALE LTLGIESSSS RAPHVVPVKK RRIDASGFCG GSTSGDDACK 300 MELGLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-100	LBD family protein