PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G05531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 138aa MW: 15439.9 Da PI: 9.5865 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 65.5 | 7.3e-21 | 26 | 93 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflklleksee..givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL ll+++f++l+++++ ++l+++a +L rRRiYD++NVL +++l+++k+kn ++wkg Ro06_G05531 26 RKQKSLSLLCSNFVSLYNREDGatSLICLDDAALRL---GD--LRRRIYDVINVLVSIGLLARKSKNTYTWKG 93 79****************96655689**********...55..8***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence |
MIEYNCVLGF GSRPLVGFSL RPSDGRKQKS LSLLCSNFVS LYNREDGATS LICLDDAALR 60 LGDLRRRIYD VINVLVSIGL LARKSKNTYT WKGFGAIPNT LKELKEEGLN LTPIPTCNNS 120 PLDETKGEKL RCFLRRIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 2e-25 | E2F/DP family protein |