PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G04896
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 316aa    MW: 35912.2 Da    PI: 6.8565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G04896genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.4e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll + vk++G g+W+++ar+ g++R++k+c++rw +yl
      Ro06_G04896 18 KGPWTPEEDKLLGEHVKLHGEGRWSSVARCTGLNRSGKSCRLRWVNYL 65
                     79********************************************97 PP
2Myb_DNA-binding53.26.9e-1771115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
      Ro06_G04896  71 RGQLTPQEEAIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115
                      7888******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MAGVMMGWGG VEEKGWRKGP WTPEEDKLLG EHVKLHGEGR WSSVARCTGL NRSGKSCRLR  60
WVNYLRPGLK RGQLTPQEEA IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKE  120
KCTQKQQKRK AEILKEKQQQ EEAVEVDQEN KKIKSASTST TAPQGHGVEA LACTSELRNM  180
ITDELQLAQA ITQEMNVVFT CPNFQEDQCL PPLVSMNQLG GATSAVESTI WSSDNNTIIN  240
IRSEDEDDQG LWGQLWNLDD DRYTSYNKCC NNVASQVITA TSSGAIHNEA TRANNFYWGE  300
DIHSEKYFYS GSGFRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.13e-64MYB family protein