PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G04886

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 305aa MW: 34069.4 Da PI: 7.3238

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G04886	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.3	9.3e-25	165	227	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGs.........ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+ WtpeLH+rF++a++ LGG+ AtPk+++e+m+vkgLt+++vkSHLQkYR+ Ro06_G04886 165 NRRIWTPELHSRFLKALNDLGGAggptlsdyiYAATPKQVREIMQVKGLTNDQVKSHLQKYRI 227 6999***************9633333333358**************************7 PP
2	Myb_DNA-binding	41.1	4e-13	168	226	3	48
SS-HHHHHHHHHHHHHTTTT............-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg............tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++++a + lGg t+k + + m+ kg+t q+ks++qky+ Ro06_G04886 168 IWTPELHSRFLKALNDLGGAggptlsdyiyaaTPKQVREIMQvKGLTNDQVKSHLQKYR 226 5***************99************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MGSSSSPLEL ALSLKPSYVP KSINHLLTDL DQIDSVSRKL SVLKDYLNKH KEELHKVEQF 60 KRELPQCVLL LMDAIQEIQE QISVIKNGNV EADQPEEPSF SPSEDDRVTM VRPNKCSRKG 120 NEKVELNNTK GSNPMLKLNI NADDYAVPVV NNHCPSLSQP ILRNNRRIWT PELHSRFLKA 180 LNDLGGAGGP TLSDYIYAAT PKQVREIMQV KGLTNDQVKS HLQKYRIYKR AGVPGPEAVA 240 SSISAESADH LHRPAAMASQ EKWIPQSQFP CTTRDFFSTA TSIPQYSNSS QHQGDDDPGM 300 HNYGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-25	G2-like family protein