PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G03863

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 392aa MW: 44400.7 Da PI: 5.5607

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G03863	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.7	2.3e-26	60	142	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+ Ro06_G03863 60 WVQEETRSLISFRREVDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLQ 142 ******************************************************************98..45568***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MYLSEKPHPI DFYKSVDGEE SERDMMMEVV AANGVPPGGN NSSGGEEHEV RAPKKRAETW 60 VQEETRSLIS FRREVDGLFN TSKSNKHLWE QISAKMREKG FDRSPTMCTD KWRNLLKEFK 120 KARHQVKVGS RSAKMSYYED LQELLRDRTT HNTTNNCAAA ATNTAAYKSP TPPPKLESFI 180 RFSDKSLEDA GIPFGPMEAA DRTAVDLERQ LDHDGDPLAI TAADAVAANG VPPWNWREGP 240 ENGGEGHSSY CGRIITVKLG EYNSRRIGID GTADAIKEAI KSAFRIRTKR AFWLEDEYQV 300 VRSLDRDMPL GSYTLHLDEG ITIKLCLCDE SDRIVRTEEI TFYTEDDFRD FLTRRGLIGL 360 RDLRELSGYR RIDTLDDLQS GAMYQGVRLL GD

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MYLSEKPHPI DFYKSVDGEE SERDMMMEVV AANGVPPGGN NSSGGEEHEV RAPKKRAETW  60
VQEETRSLIS FRREVDGLFN TSKSNKHLWE QISAKMREKG FDRSPTMCTD KWRNLLKEFK  120
KARHQVKVGS RSAKMSYYED LQELLRDRTT HNTTNNCAAA ATNTAAYKSP TPPPKLESFI  180
RFSDKSLEDA GIPFGPMEAA DRTAVDLERQ LDHDGDPLAI TAADAVAANG VPPWNWREGP  240
ENGGEGHSSY CGRIITVKLG EYNSRRIGID GTADAIKEAI KSAFRIRTKR AFWLEDEYQV  300
VRSLDRDMPL GSYTLHLDEG ITIKLCLCDE SDRIVRTEEI TFYTEDDFRD FLTRRGLIGL  360
RDLRELSGYR RIDTLDDLQS GAMYQGVRLL GD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-148	Trihelix family protein