PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G03786

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 290aa MW: 33762.4 Da PI: 8.0786

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G03786	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2.1e-28	90	140	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k++rqvtfskRr g++KKA ELSvLC++ev +iifs +g+lye++s Ro06_G03786 90 KRIEDKIRRQVTFSKRRSGLMKKARELSVLCGVEVGLIIFSAKGRLYEFCS 140 79***********************************************96 PP
2	K-box	37	1.5e-13	180	252	28	100
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++L+ q l +++e+L++ eL qLe+qL+ l++ Rs+K++l++e i l +kek+l ee+ ++kk++e Ro06_G03786 180 NKSLKMIQSELEAQNIENLDVTELTQLEKQLDVVLRQTRSRKTQLMMETITGLIEKEKKLGEEKDLMEKKVAE 252 67788888889999***************************************************99999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MDAVNFFVFI RRYDEYTWRR EDASYILDMK LEEGLNLGRE GERERERERE RVRQNSQLRV 60 TAFITTSEAR VRVFNFQLAK IMGRGKVQLK RIEDKIRRQV TFSKRRSGLM KKARELSVLC 120 GVEVGLIIFS AKGRLYEFCS GDSLGNVLER YQIHNEEEVA NPKNGKKHHF ESSGNGTGAN 180 KSLKMIQSEL EAQNIENLDV TELTQLEKQL DVVLRQTRSR KTQLMMETIT GLIEKEKKLG 240 EEKDLMEKKV AELMREKENS QEDPDAHADE EVYEHSSSCV NTKHPVLNLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	53	RERERERERVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30260.1	3e-40	MIKC_MADS family protein