PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G03784

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 401aa MW: 44863.4 Da PI: 8.7973

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G03784	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.9	1.6e-39	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrh+vCe hsk+p v+++g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++ Ro06_G03784 97 CLVDGCKEDLSRCREYHRRHRVCELHSKTPIVVIRGQQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 173 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MEWDFKDFAW DPNDEQLDQQ KEENDLAALV GSSRTSSSRR RGAESFNLMD LKLGSSAAQE 60 ADPPSILVSS SSPPLCRTGD HHHKKLKLVS SSSSSSCLVD GCKEDLSRCR EYHRRHRVCE 120 LHSKTPIVVI RGQQKRFCQQ CSRFHSLVEF DEVKRSCRKR LNGHNQRRRK PKPESFYFTS 180 KNFLSAYKGP RILHFGTPQL CATSNVRSMW PLEAKSAADN QPMLYNRHQR FNTINHQRIP 240 PNSCIRNGGS DKQFIFLQTN DPKLAVFNQA AAPQAFMRQP FPTSPAAAAS PQSTRATADH 300 AISSDGTTQG IGSSCALYLL SSSTNPTQSL VNTGLNHLVQ SNVVNSSPSG HQQLQMKSFS 360 EFPSYCSNDH IEDKFFLRPD PDGLLDPGAQ MLPILLDILV E

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MEWDFKDFAW DPNDEQLDQQ KEENDLAALV GSSRTSSSRR RGAESFNLMD LKLGSSAAQE  60
ADPPSILVSS SSPPLCRTGD HHHKKLKLVS SSSSSSCLVD GCKEDLSRCR EYHRRHRVCE  120
LHSKTPIVVI RGQQKRFCQQ CSRFHSLVEF DEVKRSCRKR LNGHNQRRRK PKPESFYFTS  180
KNFLSAYKGP RILHFGTPQL CATSNVRSMW PLEAKSAADN QPMLYNRHQR FNTINHQRIP  240
PNSCIRNGGS DKQFIFLQTN DPKLAVFNQA AAPQAFMRQP FPTSPAAAAS PQSTRATADH  300
AISSDGTTQG IGSSCALYLL SSSTNPTQSL VNTGLNHLVQ SNVVNSSPSG HQQLQMKSFS  360
EFPSYCSNDH IEDKFFLRPD PDGLLDPGAQ MLPILLDILV E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-42	SBP family protein