PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G03753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | DBB | ||||||||
Protein Properties | Length: 231aa MW: 25697.3 Da PI: 8.7241 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.9 | 8.3e-08 | 5 | 45 | 6 | 40 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++k + l+C+ + lC C + +H+ Ht++ Ro06_G03753 5 CQVCNSKVAALYCKADLAKLCLLCDQDIHSAnalslrHTRS 45 *****************************668899999876 PP | |||||||
2 | zf-B_box | 16.6 | 1.6e-05 | 45 | 76 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+++ + ++ C++ + lC++C ++H Ro06_G03753 45 SQVCDNCRAQAASVVCFTHNISLCQTCDRHSH 76 689**************************999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MGSWCQVCNS KVAALYCKAD LAKLCLLCDQ DIHSANALSL RHTRSQVCDN CRAQAASVVC 60 FTHNISLCQT CDRHSHCSSA DRTPVQGFTG CPSSMELASV LGFDLGSQAQ NFNLSLDDDH 120 NKLIKQSLGR PKDEVYEQLV EMRMRALALS AQQQQQVEDA ASYSFISSDQ ARRPTPGQVL 180 ASEIHLNSNI EVVMDGRRSR CNAILRYNKK KKKKKKKTSR QADIIYIARA L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 215 | KKKKKKK |
2 | 209 | 217 | KKKKKKKKK |
3 | 210 | 216 | KKKKKKK |
4 | 211 | 217 | KKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.1 | 2e-25 | CO-like family protein |