PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G02883
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 290aa    MW: 33188.1 Da    PI: 5.2754
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G02883genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.61.7e-2121362128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diy.kvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                   +G+rFhPtd+elv +yL++k++  + +++  +++++ + y + ePw +      ++  + + ++ F+kr+k ++t++r  r++ sg+W+ + + ke+
  Ro06_G02883   2 EVGLRFHPTDHELVAYYLRNKADMGNnFQC-AFVSDCpEFYgEKEPWVIWDmygGYNVeDGEPLFLFTKRNKINPTSTRFDRKVGSGTWSGQYS-KEI 97 
                  68*******************998883555.78999977773569**99632442222244577**************************8876.777 PP

          NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++    ++ ++g+k+ + +  g  ++ ++  W+m+ey+l
  Ro06_G02883  98 FAEngatGKPVIGIKREFRYE-GGCHSDQNNAWLMQEYEL 136
                  77745555555********97.55555689********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MEVGLRFHPT DHELVAYYLR NKADMGNNFQ CAFVSDCPEF YGEKEPWVIW DMYGGYNVED  60
GEPLFLFTKR NKINPTSTRF DRKVGSGTWS GQYSKEIFAE NGATGKPVIG IKREFRYEGG  120
CHSDQNNAWL MQEYELPEDD VTVLCTLKKN PRKPPPPPST ARNNNVKKTK RKLDNIVVQD  180
HQLRKKPKAR EAKREEIYEA QGGRSVDHQA GSSCNVLPYH HDQEDYRPEF LVPGDQGETV  240
YISVDELLTP TPDDPVHECC CCPSESKKFQ DQLFEDNNVN LVGYVGVINE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173VKKTKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-15NAC family protein