PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G31625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 22380.2 Da PI: 4.5643 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.3 | 1.1e-19 | 15 | 51 | 10 | 46 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 vtfskRr g++KKA ELSv Cdaevav++fs tgk Ro05_G31625 15 PVTFSKRRRGLFKKARELSVHCDAEVAVVVFSATGKP 51 59*********************************85 PP | |||||||
2 | K-box | 45.8 | 2.6e-16 | 94 | 169 | 23 | 98 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +L+ke+ re+R++ G+dLe+L++ eLq+Le+++e +l+++ ++K+e +++qi l k l e+n++L++++ Ro05_G31625 94 RLNKELADSIRELRQMEGQDLEELNIDELQKLEDAIEGGLSRVLKTKDERIMSQIMALETKGAGLIEANNQLQQRI 169 5666665555788************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MTTAITIENL PVASPVTFSK RRRGLFKKAR ELSVHCDAEV AVVVFSATGK PYGSSSNSSM 60 EDVIARYKLH TKDVEKLDQQ PCPELQLENN DGIRLNKELA DSIRELRQME GQDLEELNID 120 ELQKLEDAIE GGLSRVLKTK DERIMSQIMA LETKGAGLIE ANNQLQQRIW MLSNGASGVA 180 LESEISSAEE DHGDYMDNTK N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-52 | MIKC_MADS family protein |