PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31562

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 452aa MW: 51501.9 Da PI: 8.0413

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31562	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.4	2.1e-07	75	118	2	45
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 +k++++ + +++Lee+ kn+yp+ +++ee+A++l L+ +q++ Ro05_G31562 75 SKKRKYDGYTIQQLEEFLTKNPYPNDNQKEEMARQLLLQPKQIT 118 677899999*********************************97 PP
2	START	122	7.9e-39	183	345	50	206
EEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS- CS START 50 asgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkp 136 ++++v m++ + v++l+d+k qW++++ ka tlev+ g +al+ m ae+ ++splvp R+ fvRy+rq ++ wv+vd ++ e + Ro05_G31562 183 EKAMVLMDPINIVKILMDVK-QWSTMFGnivsKARTLEVLAVGdkenfnEALHEMIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVD-ADLKEIF- 277 578999************.**99********999*****************************************.4444444. PP -.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 137 pesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + s++++ ++pSg+li+ +++g skvtwve+++++ +++l+ +l++sg+a+gak+wv+tl+rqce+ Ro05_G31562 278 --QDSLAKCYRRPSGCLIQALPDGNSKVTWVENAEVDNEDVQNLYLPLIRSGAAFGAKRWVSTLERQCER 345 ..5589************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSRQVRSFDE LIKPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SNPRSPEEDL 60 DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FLTKNPYPND NQKEEMARQL LLQPKQITTR 120 RRAKFFRSEN DALKKEVAKL HVKLKGYEQA FANTTCLVCG GPRITTKGLD YRPQVLDAGP 180 NIEKAMVLMD PINIVKILMD VKQWSTMFGN IVSKARTLEV LAVGDKENFN EALHEMIAEF 240 HLPSPLVPVR EHHFVRYCRQ YYEDLWVVVD ADLKEIFQDS LAKCYRRPSG CLIQALPDGN 300 SKVTWVENAE VDNEDVQNLY LPLIRSGAAF GAKRWVSTLE RQCERLVSSM ATSLDPISLG 360 VIYDDKGKRG LYNLVRRMML KFHSDISASA ANQWSTSLAC PGSDEIQSMV KVNMEDPGVP 420 KGTIFSTVSS LWRLTSPRDV FEFLQNLQTQ HP

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSRQVRSFDE LIKPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SNPRSPEEDL  60
DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FLTKNPYPND NQKEEMARQL LLQPKQITTR  120
RRAKFFRSEN DALKKEVAKL HVKLKGYEQA FANTTCLVCG GPRITTKGLD YRPQVLDAGP  180
NIEKAMVLMD PINIVKILMD VKQWSTMFGN IVSKARTLEV LAVGDKENFN EALHEMIAEF  240
HLPSPLVPVR EHHFVRYCRQ YYEDLWVVVD ADLKEIFQDS LAKCYRRPSG CLIQALPDGN  300
SKVTWVENAE VDNEDVQNLY LPLIRSGAAF GAKRWVSTLE RQCERLVSSM ATSLDPISLG  360
VIYDDKGKRG LYNLVRRMML KFHSDISASA ANQWSTSLAC PGSDEIQSMV KVNMEDPGVP  420
KGTIFSTVSS LWRLTSPRDV FEFLQNLQTQ HP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	7e-91	HD-ZIP family protein