PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31088

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 354aa MW: 39463.1 Da PI: 6.6683

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31088	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	2e-53	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkdkev+s+ +g Ro05_G31088 23 LPPGFRFHPTDEELITFYLASKVYNGAFCG-VDIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSAsSG 119 79***********************877.34***********8888899**********************************99788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +l g+kktLvfykgrap+g+kt+Wvmheyrl Ro05_G31088 120 SLLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 150 89*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MLGLMEEVMS ELLGREEVNE QGLPPGFRFH PTDEELITFY LASKVYNGAF CGVDIAEVDL 60 NRCEPWELPD VAKMGEREWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD KEVYSASSGS 120 LLGMKKTLVF YKGRAPRGQK TKWVMHEYRL DGDFSSYRHT CKDEWVICRI HNKTGDKRNP 180 LQAQGQGQGQ GQQGNFFLQA VEAASVSASS KSGCLPPLLE CQSQSTQNPN QAGTSNTPTT 240 SAPKQCKTEA SVNISHFQTP PLNSDAGNFS YQMEKNHPHL SNGPDSLLQY HHPRNPLFFE 300 DFHYYNGVLG LSTSCTTETE TSSSVGGFNR AGFQTMLDPL IKLPAAESWN LDIA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MLGLMEEVMS ELLGREEVNE QGLPPGFRFH PTDEELITFY LASKVYNGAF CGVDIAEVDL  60
NRCEPWELPD VAKMGEREWY FFSLRDRKYP TGLRTNRATG AGYWKATGKD KEVYSASSGS  120
LLGMKKTLVF YKGRAPRGQK TKWVMHEYRL DGDFSSYRHT CKDEWVICRI HNKTGDKRNP  180
LQAQGQGQGQ GQQGNFFLQA VEAASVSASS KSGCLPPLLE CQSQSTQNPN QAGTSNTPTT  240
SAPKQCKTEA SVNISHFQTP PLNSDAGNFS YQMEKNHPHL SNGPDSLLQY HHPRNPLFFE  300
DFHYYNGVLG LSTSCTTETE TSSSVGGFNR AGFQTMLDPL IKLPAAESWN LDIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-102	NAC family protein